Detailed information of SNP:
|
SNP ID:
sf0104577620(Gbrowse)
Chromosome: chr01 Position: 4577620 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.67% | 31.33% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 495 | 15.96% | 84.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104577620 | T->C | INTERGENIC | None |