Detailed information of SNP:
|
SNP ID:
sf0104577649(Gbrowse)
Chromosome: chr01 Position: 4577649 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 95.26% | 4.74% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 492 | 87.40% | 12.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104577649 | A->C | INTERGENIC | None |