Detailed information of SNP:
|
SNP ID:
sf0104579865(Gbrowse)
Chromosome: chr01 Position: 4579865 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 95.33% | 4.67% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 492 | 88.01% | 11.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 90 | 70.00% | 30.00% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104579865 | G->A | INTERGENIC | None |