Detailed information of SNP:
|
SNP ID:
sf0104589396(Gbrowse)
Chromosome: chr01 Position: 4589396 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 93.57% | 6.43% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 493 | 82.15% | 17.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104589396 | G->A | INTERGENIC | None |