Detailed information of SNP:
|
SNP ID:
sf0104591595(Gbrowse)
Chromosome: chr01 Position: 4591595 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 81.45% | 18.55% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 469 | 48.19% | 51.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 309 | 67.31% | 32.69% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 21.21% | 78.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104591595 | C->T | INTERGENIC | None |