Detailed information of SNP:
|
SNP ID:
sf0104591748(Gbrowse)
Chromosome: chr01 Position: 4591748 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 69.63% | 30.37% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 455 | 14.29% | 85.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 318 | 5.03% | 94.97% |
| Tropical Japonica | 84 | 35.71% | 64.29% |
| Japonica Intermediate | 53 | 35.85% | 64.15% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104591748 | G->A | INTERGENIC | None |