Detailed information of SNP:
|
SNP ID:
sf0104592340(Gbrowse)
Chromosome: chr01 Position: 4592340 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.04% | 20.96% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 495 | 45.25% | 54.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 44.01% | 55.99% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104592340 | C->A | INTERGENIC | None |