Detailed information of SNP:
|
SNP ID:
sf0104718031(Gbrowse)
Chromosome: chr01 Position: 4718031 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.50% | 5.50% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104718031 | C->T | INTERGENIC | None |