Detailed information of SNP:
|
SNP ID:
sf0104730000(Gbrowse)
Chromosome: chr01 Position: 4730000 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.37% | 37.63% |
| All Indica | 799 | 45.81% | 54.19% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 60.00% | 40.00% |
| Indica II | 213 | 12.21% | 87.79% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104730000 | T->C | LOC_Os01g09300(LOC_Os01g09300.2) | UTR_3_PRIME |
| sf0104730000 | T->C | LOC_Os01g09300(LOC_Os01g09300.1) | UTR_3_PRIME |
| sf0104730000 | T->C | LOC_Os01g09300(LOC_Os01g09300.3) | UTR_3_PRIME |