Detailed information of SNP:
|
SNP ID:
sf0104749274(Gbrowse)
Chromosome: chr01 Position: 4749274 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 72.59% | 27.41% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 491 | 24.24% | 75.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 31.12% | 68.88% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 66 | 13.64% | 86.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104749274 | T->A | INTERGENIC | None |