Detailed information of SNP:
|
SNP ID:
sf0104784744(Gbrowse)
Chromosome: chr01 Position: 4784744 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 59.32% | 40.68% |
| All Indica | 758 | 94.99% | 5.01% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 353 | 93.48% | 6.52% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 193 | 95.85% | 4.15% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104784744 | G->T | INTERGENIC | None |