Detailed information of SNP:
|
SNP ID:
sf0104830662(Gbrowse)
Chromosome: chr01 Position: 4830662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 86.68% | 13.32% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 484 | 64.46% | 35.54% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 85.37% | 14.63% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 64 | 31.25% | 68.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104830662 | G->A | INTERGENIC | None |