Detailed information of SNP:
|
SNP ID:
sf0104859223(Gbrowse)
Chromosome: chr01 Position: 4859223 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1358 | 95.29% | 4.71% |
| All Indica | 742 | 91.91% | 8.09% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 173 | 75.72% | 24.28% |
| Indica Intermediate | 199 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104859223 | C->G | LOC_Os01g09520(LOC_Os01g09520.1) | Non-Synonymous SNP |