Detailed information of SNP:
|
SNP ID:
sf0104862244(Gbrowse)
Chromosome: chr01 Position: 4862244 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 85.25% | 14.75% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 470 | 62.98% | 37.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 310 | 48.39% | 51.61% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104862244 | A->G | LOC_Os01g09520(LOC_Os01g09520.1) | INTRON |