Detailed information of SNP:
|
SNP ID:
sf0104900845(Gbrowse)
Chromosome: chr01 Position: 4900845 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.42% | 9.58% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104900845 | G->A | INTERGENIC | None |