Detailed information of SNP:
|
SNP ID:
sf0104988336(Gbrowse)
Chromosome: chr01 Position: 4988336 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 78.22% | 21.78% |
| All Indica | 799 | 69.59% | 30.41% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104988336 | C->T | INTERGENIC | None |