Detailed information of SNP:
|
SNP ID:
sf0104991072(Gbrowse)
Chromosome: chr01 Position: 4991072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 59.25% | 40.75% |
| All Indica | 797 | 32.50% | 67.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 52.94% | 47.06% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 210 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0104991072 | A->G | LOC_Os01g09690(LOC_Os01g09690.1) | INTRON |