Detailed information of SNP:
|
SNP ID:
sf0105004584(Gbrowse)
Chromosome: chr01 Position: 5004584 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 65.21% | 34.79% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 496 | 7.06% | 92.94% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105004584 | A->T | LOC_Os01g09700(LOC_Os01g09700.1) | INTRON |