Detailed information of SNP:
|
SNP ID:
sf0105020483(Gbrowse)
Chromosome: chr01 Position: 5020483 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 91.98% | 8.02% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 487 | 79.67% | 20.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 325 | 71.38% | 28.62% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105020483 | G->C | LOC_Os01g09750(LOC_Os01g09750.1) | UTR_3_PRIME |