Detailed information of SNP:
|
SNP ID:
sf0105041933(Gbrowse)
Chromosome: chr01 Position: 5041933 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 74.36% | 25.64% |
| All Indica | 796 | 58.04% | 41.96% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 60 | 65.00% | 35.00% |
| Indica I | 375 | 26.13% | 73.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 208 | 75.48% | 24.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105041933 | C->T | INTERGENIC | None |