Detailed information of SNP:
|
SNP ID:
sf0105074602(Gbrowse)
Chromosome: chr01 Position: 5074602 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.90% | 40.10% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105074602 | T->C | INTERGENIC | None |