Detailed information of SNP:
|
SNP ID:
sf0105077015(Gbrowse)
Chromosome: chr01 Position: 5077015 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 69.13% | 30.87% |
| All Indica | 790 | 51.65% | 48.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 373 | 75.07% | 24.93% |
| Indica II | 210 | 29.05% | 70.95% |
| Indica Intermediate | 207 | 32.37% | 67.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105077015 | C->T | INTERGENIC | None |