Detailed information of SNP:
|
SNP ID:
sf0105079826(Gbrowse)
Chromosome: chr01 Position: 5079826 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 74.22% | 25.78% |
| All Indica | 797 | 58.72% | 41.28% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 373 | 28.42% | 71.58% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105079826 | G->A | INTERGENIC | None |