Detailed information of SNP:
|
SNP ID:
sf0105124030(Gbrowse)
Chromosome: chr01 Position: 5124030 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 96.62% | 3.38% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 470 | 90.85% | 9.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 56.25% | 43.75% |
| Japonica Intermediate | 56 | 85.71% | 14.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105124030 | G->A | INTERGENIC | None |