Detailed information of SNP:
|
SNP ID:
sf0105129764(Gbrowse)
Chromosome: chr01 Position: 5129764 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 72.74% | 27.26% |
| All Indica | 797 | 55.96% | 44.04% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 29.14% | 70.86% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105129764 | T->C | INTERGENIC | None |