Detailed information of SNP:
|
SNP ID:
sf0105132448(Gbrowse)
Chromosome: chr01 Position: 5132448 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 68.74% | 31.26% |
| All Indica | 797 | 51.82% | 48.18% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 374 | 72.19% | 27.81% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 210 | 44.29% | 55.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105132448 | T->C | INTERGENIC | None |