Detailed information of SNP:
|
SNP ID:
sf0105133457(Gbrowse)
Chromosome: chr01 Position: 5133457 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 64.36% | 35.64% |
| All Indica | 797 | 55.33% | 44.67% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 374 | 28.88% | 71.12% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 84.48% | 15.52% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105133457 | A->G | INTERGENIC | None |