Detailed information of SNP:
|
SNP ID:
sf0105134512(Gbrowse)
Chromosome: chr01 Position: 5134512 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 72.94% | 27.06% |
| All Indica | 799 | 56.32% | 43.68% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 30.13% | 69.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105134512 | G->A | INTERGENIC | None |