Detailed information of SNP:
|
SNP ID:
sf0105136567(Gbrowse)
Chromosome: chr01 Position: 5136567 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 76.84% | 23.16% |
| All Indica | 796 | 64.95% | 35.05% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 373 | 46.38% | 53.62% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105136567 | G->A | INTERGENIC | None |