Detailed information of SNP:
|
SNP ID:
sf0105136583(Gbrowse)
Chromosome: chr01 Position: 5136583 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 76.91% | 23.09% |
| All Indica | 796 | 64.95% | 35.05% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 373 | 46.11% | 53.89% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105136583 | C->T | INTERGENIC | None |