Detailed information of SNP:
|
SNP ID:
sf0105147196(Gbrowse)
Chromosome: chr01 Position: 5147196 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 63.86% | 36.14% |
| All Indica | 796 | 41.58% | 58.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 372 | 52.96% | 47.04% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105147196 | A->G | INTERGENIC | None |