Detailed information of SNP:
|
SNP ID:
sf0105150694(Gbrowse)
Chromosome: chr01 Position: 5150694 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1203 | 82.71% | 17.29% |
| All Indica | 785 | 94.39% | 5.61% |
| All Japonica | 305 | 49.51% | 50.49% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 201 | 82.59% | 17.41% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 202 | 54.46% | 45.54% |
| Tropical Japonica | 56 | 53.57% | 46.43% |
| Japonica Intermediate | 47 | 23.40% | 76.60% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 33 | 81.82% | 18.18% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105150694 | T->A | INTERGENIC | None |