Detailed information of SNP:
|
SNP ID:
sf0105152133(Gbrowse)
Chromosome: chr01 Position: 5152133 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 72.88% | 27.12% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 493 | 27.18% | 72.82% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 29.43% | 70.57% |
| Tropical Japonica | 92 | 29.35% | 70.65% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105152133 | T->C | INTERGENIC | None |