Detailed information of SNP:
|
SNP ID:
sf0105158820(Gbrowse)
Chromosome: chr01 Position: 5158820 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.88% | 21.12% |
| All Indica | 797 | 66.62% | 33.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 373 | 49.33% | 50.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105158820 | C->A | INTERGENIC | None |