Detailed information of SNP:
|
SNP ID:
sf0105159384(Gbrowse)
Chromosome: chr01 Position: 5159384 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.04% | 21.96% |
| All Indica | 797 | 65.37% | 34.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 373 | 47.18% | 52.82% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105159384 | G->A | INTERGENIC | None |