Detailed information of SNP:
|
SNP ID:
sf0105165176(Gbrowse)
Chromosome: chr01 Position: 5165176 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1181 | 97.21% | 2.79% |
| All Indica | 588 | 94.73% | 5.27% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 46 | 95.65% | 4.35% |
| Indica I | 229 | 91.70% | 8.30% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 147 | 91.84% | 8.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105165176 | G->T | LOC_Os01g09930(LOC_Os01g09930.1) | INTRON |