Detailed information of SNP:
|
SNP ID:
sf0105171050(Gbrowse)
Chromosome: chr01 Position: 5171050 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 96.64% | 3.36% |
| All Indica | 732 | 94.13% | 5.87% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 57 | 98.25% | 1.75% |
| Indica I | 328 | 94.51% | 5.49% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 191 | 86.91% | 13.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105171050 | C->T | INTERGENIC | None |