Detailed information of SNP:
|
SNP ID:
sf0105180705(Gbrowse)
Chromosome: chr01 Position: 5180705 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1150 | 60.43% | 39.57% |
| All Indica | 642 | 62.46% | 37.54% |
| All Japonica | 406 | 60.84% | 39.16% |
| Aus | 51 | 33.33% | 66.67% |
| Indica I | 310 | 66.77% | 33.23% |
| Indica II | 155 | 49.03% | 50.97% |
| Indica Intermediate | 177 | 66.67% | 33.33% |
| Temperate Japonica | 276 | 68.12% | 31.88% |
| Tropical Japonica | 78 | 47.44% | 52.56% |
| Japonica Intermediate | 52 | 42.31% | 57.69% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105180705 | G->A | LOC_Os01g09960(LOC_Os01g09960.1) | INTRON |