Detailed information of SNP:
|
SNP ID:
sf0105185659(Gbrowse)
Chromosome: chr01 Position: 5185659 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 78.44% | 21.56% |
| All Indica | 790 | 65.95% | 34.05% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 368 | 48.91% | 51.09% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105185659 | G->A | INTERGENIC | None |