Detailed information of SNP:
|
SNP ID:
sf0105187247(Gbrowse)
Chromosome: chr01 Position: 5187247 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.23% | 38.77% |
| All Indica | 796 | 36.56% | 63.44% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 54.28% | 45.72% |
| Indica II | 213 | 2.82% | 97.18% |
| Indica Intermediate | 209 | 39.23% | 60.77% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105187247 | A->T | INTERGENIC | None |