Detailed information of SNP:
|
SNP ID:
sf0105190165(Gbrowse)
Chromosome: chr01 Position: 5190165 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 62.27% | 37.73% |
| All Indica | 783 | 37.55% | 62.45% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 372 | 54.03% | 45.97% |
| Indica II | 208 | 3.37% | 96.63% |
| Indica Intermediate | 203 | 42.36% | 57.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105190165 | G->A | LOC_Os01g09970(LOC_Os01g09970.1) | INTRON |