Detailed information of SNP:
|
SNP ID:
sf0105204583(Gbrowse)
Chromosome: chr01 Position: 5204583 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.86% | 42.14% |
| All Indica | 799 | 32.29% | 67.71% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 30.52% | 69.48% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105204583 | T->C | INTERGENIC | None |