Detailed information of SNP:
|
SNP ID:
sf0105206598(Gbrowse)
Chromosome: chr01 Position: 5206598 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 77.34% | 22.66% |
| All Indica | 792 | 65.53% | 34.47% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 370 | 47.84% | 52.16% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105206598 | C->A | INTERGENIC | None |