Detailed information of SNP:
|
SNP ID:
sf0105239226(Gbrowse)
Chromosome: chr01 Position: 5239226 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.93% | 39.07% |
| All Indica | 798 | 33.71% | 66.29% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 47.59% | 52.41% |
| Indica II | 213 | 2.82% | 97.18% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105239226 | A->G | LOC_Os01g10040(LOC_Os01g10040.1) | INTRON |
| sf0105239226 | A->G | LOC_Os01g10040(LOC_Os01g10040.2) | INTRON |