Detailed information of SNP:
|
SNP ID:
sf0105286209(Gbrowse)
Chromosome: chr01 Position: 5286209 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.20% | 48.80% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105286209 | C->T | INTERGENIC | None |