Detailed information of SNP:
|
SNP ID:
sf0105362238(Gbrowse)
Chromosome: chr01 Position: 5362238 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.36% | 22.64% |
| All Indica | 799 | 64.33% | 35.67% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105362238 | G->A | INTERGENIC | None |