Detailed information of SNP:
|
SNP ID:
sf0105365812(Gbrowse)
Chromosome: chr01 Position: 5365812 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.29% | 22.71% |
| All Indica | 798 | 64.29% | 35.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 48.13% | 51.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105365812 | G->T | INTERGENIC | None |