Detailed information of SNP:
|
SNP ID:
sf0105458915(Gbrowse)
Chromosome: chr01 Position: 5458915 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 81.85% | 18.15% |
| All Indica | 790 | 70.00% | 30.00% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 87.10% | 12.90% |
| Indica I | 371 | 56.87% | 43.13% |
| Indica II | 209 | 75.60% | 24.40% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105458915 | G->A | INTERGENIC | None |