Detailed information of SNP:
|
SNP ID:
sf0105466672(Gbrowse)
Chromosome: chr01 Position: 5466672 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 88.89% | 11.11% |
| All Indica | 749 | 80.51% | 19.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 178 | 49.44% | 50.56% |
| Indica Intermediate | 200 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105466672 | G->A | INTERGENIC | None |