Detailed information of SNP:
|
SNP ID:
sf0105466815(Gbrowse)
Chromosome: chr01 Position: 5466815 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 64.26% | 35.74% |
| All Indica | 769 | 60.34% | 39.66% |
| All Japonica | 494 | 72.47% | 27.53% |
| Aus | 59 | 55.93% | 44.07% |
| Indica I | 366 | 48.91% | 51.09% |
| Indica II | 199 | 59.80% | 40.20% |
| Indica Intermediate | 204 | 81.37% | 18.63% |
| Temperate Japonica | 334 | 64.97% | 35.03% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105466815 | T->C | INTERGENIC | None |